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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676747692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 512aa MW: 56639.4 Da PI: 8.5614 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 69 | 89 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F r nL+ H r H 676747692 69 CEVCGKGFQRDQNLQLHRRGH 89 *******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00024 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ 676747692 143 WKCEKCSKRYAVQSDWKAHSKTC 165 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.5E-5 | 65 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.089 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 131 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 130 | 143 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MTAEDQTISG SGGYVRSSST TDHVDHHEHE SLNPPLAKKK RNLPGNPDPE AEVIALSPKT 60 LMATNRFLCE VCGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKRVYVC PEKTCVHHHP 120 TRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTIFSR 180 RDSFITHRAF CDALAEETAR LNAASHLKSL TSNNLNYHYL MGTLIPSPPP PPSFPFGAQQ 240 PQPQPPQHQH HHHFPITTTN FDHHHQHQDA MKPASSLSLW MGGNINHHQV TINDRSIAMH 300 PQPQSPHDDY NWVFGNANNR GELITTSDPL MTQEHINIVV PSKENANAAT SLSVPSLFSS 360 VDHMTQDANA AVSAVANMSA TALLQKAAQM GANSSTPTTT TSITTDQSAF LQSFASKISG 420 QSQIVEDGGS DKFFALFGSN SVGLMGNNGL HHELDNPRNG ITVVSGIDEL QNYPWKRRRV 480 ESGDVGAGGQ TRDFLGVGVQ TMCHSSSING WI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 475 | 479 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475014.1 | 0.0 | PREDICTED: zinc finger protein MAGPIE-like isoform X1 | ||||
Swissprot | Q9ZWA6 | 0.0 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | R0GWJ5 | 0.0 | R0GWJ5_9BRAS; Uncharacterized protein | ||||
STRING | Bra032541.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 0.0 | C2H2 family protein |